Prediction of biological activity of spiroquinazolone derivatives as protein kinase inhibitors FGFR1 and CK2

Authors

  • O. K. Farat Ukrainian State University of Chemical Technology, Dnipro, Ukraine,
  • S. A. Varenychenko Ukrainian State University of Chemical Technology, Dnipro, Ukraine,
  • V. I. Markov Ukrainian State University of Chemical Technology, Dnipro, Ukraine,

DOI:

https://doi.org/10.14739/2409-2932.2020.1.198175

Keywords:

spiroquinazolone derivatives, protein kinase inhibitors, receptor-oriented virtual screening, techniques in vitro, biochemical phenomena

Abstract

 

The purpose. The search for FGFR1 and CK2 protein kinase inhibitors were performed among spiroquinazolone derivatives using receptor-oriented virtual screening and in vitro biochemical testing using the human CK2 kinase domain.

Materials and methods. The docking was performed at ATP binding sites for protein kinases CK2 and FGFR1 using the Autodock4 program. The inhibitory activity of the studied compounds against the protein kinase CK2 was determined by the inclusion of a phosphate group-containing radioactive 32P in the peptide substrate when it was phosphorylated by the kinase in the presence of γ-32P-ATP.

Results. Testing results for the selected compounds showed that when added to an IC50 concentration of 10 µM, the protein kinase residual activity was more than 45 %.

Conclusions. The results of the analysis of LogP and LogS indicated that the optimization of spiroquinazolone derivatives should be carried out in the direction of increasing the hydrophobicity of these compounds.

 

References

  1. Hernandez, D. C., & Vyas, P. (2019). Oncogenic Drivers and Development. Cancer Discovery, 9(12), 1653-1655. https://doi.org/10.1158/2159-8290.cd-19-1082
  2. Obeng, E. A., Stewart, C., & Abdel-Wahab, O. (2019). Altered RNA Processing in Cancer Pathogenesis and Therapy. Cancer Discovery, 9(11), 1493-1510. https://doi.org/10.1158/2159-8290.cd-19-0399
  3. Xu, C. C., Li, W. L., Qiu, P. H., Xia, Y. Q., Du, X. J., Wang, F., … Li, X. K. (2015). The therapeutic potential of a novel non-ATP-competitive fibroblast growth factor receptor 1 inhibitor on gastric cancer. Anti-Cancer Drugs, 26(4), 379-387. https://doi.org/10.1097/cad.0000000000000195
  4. Chua, M. M. J., Ortega, C. E., Sheikh, A., Lee, M., Abdul-Rassoul, H., Hartshorn, K. L., & Dominguez, I. (2017). CK2 in Cancer: Cellular and Biochemical Mechanisms and Potential Therapeutic Target. Pharmaceuticals, 10(1), Article Unsp 18. https://doi.org/10.3390/ph10010018
  5. Andre, F., Arnedos, M., Baras, A. S., Baselga, J., Bedard, P. L., Berger, M. F., … Consortium, A. P. G. (2017). AACR Project GENIE: Powering Precision Medicine through an International Consortium. Cancer Discovery, 7(8), 818-831. https://doi.org/10.1158/2159-8290.cd-17-0151
  6. Trembley, J. H., Wu, J. J., Unger, G. M., Kren, B. T., & Ahmed, K. (2013). CK2 suppression of apoptosis and its implication in cancer biology and therapy. Protein kinase CK2 (pp. 319-343) https://doi.org/10.1002/9781118482490.ch12
  7. Ahmed, K., Davis, A. T., Wang, H. M., Faust, R. A., Yu, S. H., & Tawfic, S. (2000). Significance of protein kinase CK2 nuclear signaling in neoplasia. Journal of Cellular Biochemistry, 130-135.
  8. Litchfield, D. W. (2003). Protein kinase CK2: structure, regulation and role in cellular decisions of life and death. Biochemical Journal, 369, 1-15. https://doi.org/10.1042/bj20021469
  9. Ahmad, K. A., Wang, G. X., Unger, G., Slaton, J., & Ahmed, K. (2008). Protein kinase CK2-A key suppressor of apoptosis. Advances in Enzyme Regulation, Vol 48, 48, 179-187. https://doi.org/10.1016/j.advenzreg.2008.04.002
  10. Filhol, O., Deshiere, A., & Cochet, C. (2013). Role of CK2 in the control of cell plasticity in breast carcinoma progression. Protein kinase CK2 (pp. 363-382) https://doi.org/10.1002/9781118482490.ch14
  11. Montenarh, M. (2014). Protein Kinase CK2 and Angiogenesis. Advances in Clinical and Experimental Medicine, 23(2), 153-158. https://doi.org/10.17219/acem/37040
  12. Sarno, S., Papinutto, E., Franchin, C., Bain, J., Elliott, M., Meggio, F., … Pinna, L. A. (2011). ATP Site-Directed Inhibitors of Protein Kinase CK2: An Update. Current Topics in Medicinal Chemistry, 11(11), 1340-1351. https://doi.org/10.2174/156802611795589638
  13. Prykhod'ko, A. O., Dubinina, G. G., Golovach, S. M., Yarmoluk, S. M. (2004). Inhibitory proteinkinazy SK2 [Inhibitors of protein kinase CK2] Ukrainica Bioorganica Acta, (1-2), 39-48. [in Ukrainian].
  14. Chilin, A., Battistutta, R., Bortolato, A., Cozza, G., Zanatta, S., Poletto, G., … Moro, S. (2008). Coumarin as attractive casein kinase 2 (CK2) inhibitor scaffold: An integrate approach to elucidate the putative binding motif and explain structure-activity relationships. Journal of Medicinal Chemistry, 51(4), 752-759. https://doi.org/10.1021/jm070909t
  15. Lolli, G., Cozza, G., Mazzorana, M., Tibaldi, E., Cesaro, L., Donella-Deana, A., … Pinna, L. A. (2012). Inhibition of Protein Kinase CK2 by Flavonoids and Tyrphostins. A Structural Insight. Biochemistry, 51(31), 6097-6107. https://doi.org/10.1021/bi300531c
  16. Syniugin, A. R., Ostrynska, O. V., Chekanov, M. O., Volynets, G. P., Starosyla, S. A., Bdzhola, V. G., & Yarmoluk, S. M. (2016). Design, synthesis and evaluation of 3-quinoline carboxylic acids as new inhibitors of protein kinase CK2. Journal of Enzyme Inhibition and Medicinal Chemistry, 31, 160-169. https://doi.org/10.1080/14756366.2016.1222584
  17. Golub, A. G., Yakovenko, O. Y., Bdzhola, V. G., Sapelkin, V. M., Zien, P., & Yarmoluk, S. M. (2006). Evaluation of 3-carboxy-4(1H)-quinolones as inhibitors of human protein kinase CK2. Journal of Medicinal Chemistry, 49(22), 6443-6450. https://doi.org/10.1021/jm050048t
  18. Chekanov, M. O., Ostrynska, O. V., Tarnavskyi, S. S., Synyugin, A. R., Briukhovetska, N. V., Bdzhola, V. G., . . . Yarmoluk, S. M. (2014). Design, synthesis and biological evaluation of 2-aminopyrimidinones and their 6-aza-analogs as a new class of CK2 inhibitors. Journal of Enzyme Inhibition and Medicinal Chemistry, 29(5), 639-646. https://doi.org/10.3109/14756366.2013.837898
  19. Prykhod'ko, A. O., Yakovenko, O. Y., Golub, A. G., Bdzhola, V. G., & Yarmoluk, S. M. (2005). Evaluation of 4H-4-chromenone derivatives as inhibitors of protein kinase CK2. Biopolymers and Cell, 21(3), 287-292. https://doi.org/10.7124/bc.0006F4
  20. Chon, H. J., Bae, K. J., Lee, Y., & Kim, J. (2015). The casein kinase 2 inhibitor, CX-4945, as an anti-cancer drug in treatment of human hematological malignancies. Frontiers in Pharmacology, 6, Article 70. https://doi.org/10.3389/fphar.2015.00070
  21. Varenichenko, S. A., Farat, O. K., Markov, V. I. (2013). Sintez novykh proizvodnykh 2-spirokhinazolonov [Synthesis of New Derivatives of 2-Spiroquinazolones]. Voprosy khimii i khimicheskoi tekhnologii, (6), 28-31. [in Russian].
  22. Markov, V. I., & Farat, O. K. (2012). 5',6',7',8'-Tetrahydro-1'H,3'H-spiro cyclohexane-1,2'-quinazolin -4'-one in Mannich reaction. Chemistry of Heterocyclic Compounds, 48(6), 925-930. https://doi.org/10.1007/s10593-012-1078-z
  23. Shi, D. X., Qian, D. F., Zhang, Q., & Li, J. R. (2009). Cyclohexanespiro-2'-2',3',6',7'-tetrahydro-1'H-cyclopenta d pyrimidin-4'(5'H)-one. Acta Crystallographica Section E-Crystallographic Communications, 65, O615-U2652. https://doi.org/10.1107/s1600536809005388
  24. Upadysheva, A. V., Grigor'eva, N. D., Ryabokobylko, Yu. S., Znamenskaya, A. P. (1983). Recyclization of 2,2-disubstituted 4(3H)-oxo- and 4-chloro-1,2-dihydropyrimidines to 4-aminopyridine derivatives. Chemistry of Heterocyclic Compounds, 19(1), 95-100. https://doi.org/10.1007/BF00512825
  25. Paleček, J., & Kuthan, J. (1974). Zur N‐Alkylierung von 1,4‐Dihydropyridinderivaten. Zeitschrift Für Chemie, 14(8), 308-309. https://doi.org/10.1002/zfch.19740140807
  26. Markov, V. I., Farat, O. K., Varenichenko, S. A., Velikaya, E. V., Zubatyuk, R. I., & Shishkin, O. V. (2013). Synthesis and Formylation of Substituted 2-Spiropyrimidin-4-ones and Related Compounds. Chemistry of Heterocyclic Compounds, 49(8), 1158-1165. https://doi.org/10.1007/s10593-013-1358-2
  27. Lipinski, C. A., Lombardo, F., Dominy, B. W., & Feeney, P. J. (2001). Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings (Reprinted from Advanced Drug Delivery Reviews, vol 23, pg 3-25, 1997). Advanced Drug Delivery Reviews, 46(1-3), 3-26. https://doi.org/10.1016/s0169-409x(00)00129-0

Downloads

How to Cite

1.
Farat OK, Varenychenko SA, Markov VI. Prediction of biological activity of spiroquinazolone derivatives as protein kinase inhibitors FGFR1 and CK2. Current issues in pharmacy and medicine: science and practice [Internet]. 2020Mar.10 [cited 2026Jun.26];13(1). Available from: https://pharmed.zsmu.edu.ua/article/view/198175

Issue

Section

Original research